Bibliographic references for the synthetic tree

The following studies (listed alphabetically by first author) have contributed to the current synthetic tree.

A. Bucklin, B. Frost, J. Bradford-Grieve, L. Allen, N. Copley, 2003, 'Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae', Marine Biology, vol. 142, no. 2, pp. 333-343 https://doi.org/10.1007/s00227-002-0943-1
Quintero, Esther, Camila C. Ribas, Joel Cracraft. 2012. The Andean Hapalopsittaca parrots (Psittacidae, Aves): an example of montane-tropical lowland vicariance. Zoologica Scripta 42 (1): 28-43. https://doi.org/10.1111/j.1463-6409.2012.00567.x
1987 Schaefer, S.A. Osteology of Hypostomus plecostomus (Linnaeus), with a phylogenetic analysis of the loricariid subfamilies (Pisces: Siluroidei). Contributions in Science, Natural History Museum of Los Angeles County, no. 394, 31 p http://www.nhm.org/site/sites/default/files/pdf/contrib_science/CS394.pdf
A. C. Schneider, W. A. Freyman, C. M. Guilliams, Y. P. Springer, B. G. Baldwin, 2016, 'Pleistocene radiation of the serpentine-adapted genus Hesperolinon and other divergence times in Linaceae (Malpighiales)', American Journal of Botany, vol. 103, no. 2, pp. 221-232 https://doi.org/10.3732/ajb.1500379
A. Delgado-Salinas, M. Thulin, R. Pasquet, N. Weeden, M. Lavin. 2011. Vigna (Leguminosae) sensu lato: The names and identities of the American segregate genera. American Journal of Botany 98(10):1694-1715. https://doi.org/10.3732/ajb.1100069
A. da Marcela Vasco-Palacios, C. Lopez-Quintero, A. E. Franco-Molano, T. Boekhout, 2014, 'Austroboletus amazonicus sp. nov. and Fistulinella campinaranae var. scrobiculata, two commonly occurring boletes from a forest dominated by Pseudomonotes tropenbosii (Dipterocarpaceae) in Colombian Amazonia', Mycologia, vol. 106, no. 5, pp. 1004-1014 https://doi.org/10.3852/13-324
ALAN H. BORNBUSCH, 1995, 'Phylogenetic relationships within the Eurasian catfish family Siluridae (Pisces: Siluriformes), with comments on generic validities and biogeography', Zoological Journal of the Linnean Society, vol. 115, no. 1, pp. 1-46 https://doi.org/10.1111/j.1096-3642.1995.tb02322.x
Agnarsson, I., Zambrana-torrelio C.M., Flores saldaña N.P., & May-collado L.M. 2011. A time-calibrated species-level phylogeny of bats (Chiroptera, Mammalia). PLoS Currents: Tree of Life, Version 44. https://doi.org/10.1371/currents.RRN1212
Agorreta, Ainhoa, Diego San Mauro, Ulrich Schliewen, James L. Van Tassell, Marcelo Kovačić, Rafael Zardoya, Lukas Rüber. 2013. Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies. Molecular Phylogenetics and Evolution 69 (3): 619-633. https://doi.org/10.1016/j.ympev.2013.07.017
Ahyong, S., Lai J., Sharkey D., Colgan D., & Ng P. 2007. Phylogenetics of the brachyuran crabs (Crustacea: Decapoda): the status of Podotremata based on small subunit nuclear ribosomal RNA. Molecular Phylogenetics and Evolution 45 (2): 576-586. https://doi.org/10.1016/j.ympev.2007.03.022
Ainscough, B. J., Breinholt, J. W., Robison, H. W., & Crandall, K. A. (2013). Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae). Zoologica Scripta. https://doi.org/10.1111/zsc.12006
Alencar, Laura R.V., Tiago B. Quental, Felipe G. Grazziotin, Michael L. Alfaro, Marcio Martins, Mericien Venzon, Hussam Zaher. 2016. Diversification in vipers: Phylogenetic relationships, time of divergence and shifts in speciation rates. Molecular Phylogenetics and Evolution 105: 50-62 https://doi.org/10.1016/j.ympev.2016.07.029
Alex Dornburg, Jon Moore, Jeremy M. Beaulieu, Ron I. Eytan, Thomas J. Near, 2014, 'The impact of shifts in marine biodiversity hotspots on patterns of range evolution: Evidence from the Holocentridae (squirrelfishes and soldierfishes)', Evolution, vol. 69, no. 1, pp. 146-161 https://doi.org/10.1111/evo.12562
Alexandra S. Petrunina, Tatyana V. Neretina, Nikolay S. Mugue, Gregory A. Kolbasov, 2013, 'Tantulocarida versus Thecostraca: inside or outside? First attempts to resolve phylogenetic position of Tantulocarida using gene sequences', Journal of Zoological Systematics and Evolutionary Research, vol. 52, no. 2, pp. 100-108 https://doi.org/10.1111/jzs.12045
Allen G. Collins, Bastian Bentlage, Alberto Lindner, Dhugal Lindsay, Steven H.D. Haddock, Gerhard Jarms, Jon L. Norenburg, Thomas Jankowski, Paulyn Cartwright, 2008, 'Phylogenetics of Trachylina (Cnidaria: Hydrozoa) with new insights on the evolution of some problematical taxa', Journal of the Marine Biological Association of the United Kingdom, vol. 88, no. 08, p. 1673 https://doi.org/10.1017/s0025315408001732
Allen G., Soltis D., & Soltis P. 2003. Phylogeny and biogeography of Erythronium (Liliaceae) inferred from chloroplast matK and nuclear rDNA ITS sequences. Systematic Botany, 28(3): 512-523. https://doi.org/10.1043/02-18.1
Almeida, Francisca C., Norberto P. Giannini, Nancy B. Simmons, Kristofer M. Helgen. 2014. Each flying fox on its own branch: a phylogenetic tree for Pteropus and related genera (Chiroptera: Pteropodidae). Molecular Phylogenetics and Evolution 77: 83-95. https://doi.org/10.1016/j.ympev.2014.03.009
Alstrom, P., D. M. Hooper, Y. Liu, U. Olsson, D. Mohan, M. Gelang, H. Le Manh, J. Zhao, F. Lei, T. D. Price. 2014. Discovery of a relict lineage and monotypic family of passerine birds. Biology Letters 10 (3): 20131067-20131067. https://doi.org/10.1098/rsbl.2013.1067
Alström, Per, Keith N. Barnes, Urban Olsson, F. Keith Barker, Paulette Bloomer, Aleem Ahmed Khan, Masood Ahmed Qureshi, Alban Guillaumet, Pierre-André Crochet, Peter G. Ryan. 2013. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity. Molecular Phylogenetics and Evolution 69 (3): 1043-1056. https://doi.org/10.1016/j.ympev.2013.06.005
Amanda F. Cunha, Allen G. Collins, Antonio C. Marques, 2017, 'Phylogenetic relationships of Proboscoida Broch, 1910 (Cnidaria, Hydrozoa): Are traditional morphological diagnostic characters relevant for the delimitation of lineages at the species, genus, and family levels?', Molecular Phylogenetics and Evolution, vol. 106, pp. 118-135 https://doi.org/10.1016/j.ympev.2016.09.012
Andrea M. Quattrini, Samuel E. Georgian, Luke Byrnes, Alex Stevens, Rosalia Falco, Erik E. Cordes, 2013, 'Niche divergence by deep-sea octocorals in the genusCallogorgiaacross the continental slope of the Gulf of Mexico', Molecular Ecology, vol. 22, no. 15, pp. 4123-4140 https://doi.org/10.1111/mec.12370
Anker, A., & Baeza J. 2012. Molecular and morphological phylogeny of hooded shrimps, genera Betaeus and Betaeopsis (Decapoda, Alpheidae): testing the Center of Origin biogeographic model and evolution of life history traits. Molecular Phylogenetics and Evolution 64 (3): 401-415. https://doi.org/10.1016/j.ympev.2012.04.015
Aoki T., & O'donnell K. 1999. Morphological and molecular characterization of Fusarium pseudograminearum sp. nov., formerly recognized as the group 1 population of F. graminearum. Mycologia, 1999(4): 597-609. https://doi.org/10.2307/3761245
Aoki T., O'donnell K., Homma Y., & Lattanzi A. 2003. Sudden death syndrome of soybean is caused by two morphologically and phylogenetically distinct species within the Fusarium solani species complex, F. virguliforme in North America and F. tucumaniae in South America. Mycologia, 95(4): 660-684. https://doi.org/10.2307/3761942
Aoki T., Scandiani M.M., & O'donnell K. 2011. Phenotypic, molecular phylogenetic and pathogenetic characterization of Fusarium crassistipitatum sp. nov., a novel soybean sudden death syndrome pathogen from Argentina and Brazil. Mycoscience, 53(3), 167-186 https://doi.org/10.1007/s10267-011-0150-3
Aoki T., Suga H., Hyakumachi M., Scandiani M.M., & O'donnell K. 2012. Fusarium azukicola sp. nov., a novel exotic azuki bean root-rot pathogen in Hokkaido, Japan. Mycologia, 104(5): 1068-1084. https://doi.org/10.3852/11-303
Arbabi, Tayebeh, Javier Gonzalez, Michael Wink. 2014. A re-evaluation of phylogenetic relationships within reed warblers (Aves: Acrocephalidae) based on eight molecular loci and ISSR profiles. Molecular Phylogenetics and Evolution 78: 304-313. https://doi.org/10.1016/j.ympev.2014.05.026
Armbruster J.W. 2004. Phylogenetic relationships of the suckermouth armoured catfishes (Loricariidae) with emphasis on the Hypostominae and the Ancistrinae. Zoological Journal of the Linnean Society, 141(1): 1-80. https://doi.org/10.1111/j.1096-3642.2004.00109.x
Armenta, Jessica K., Jason D. Weckstein, Daniel F. Lane. 2005. Geographic variation in mitochondrial DNA sequences of an Amazonian nonpasserine: The Black-spotted Barbet complex. The Condor 107 (3): 527-536. https://doi.org/10.1650/0010-5422(2005)107[0527:gvimds]2.0.co;2
Arshad, Muhammad, Javier Gonzalez, Abdel Aziz El-Sayed, Tim Osborne, Michael Wink. 2009. Phylogeny and phylogeography of critically endangered Gyps species based on nuclear and mitochondrial markers. Journal of Ornithology 150 (2): 419-430. https://doi.org/10.1007/s10336-008-0359-x
Arunpak Pitakpong, Ekaphan Kraichak, Khwanruan Butsathorn Papong, Nooduan Muangsan, Pongthep Suwanwaree, H. Thorsten Lumbsch, Robert Lücking, 2015, 'New species and records of the lichen genus Graphis (Graphidaceae, Ascomycota) from Thailand', The Lichenologist, vol. 47, no. 05, pp. 335-342 https://doi.org/10.1017/s0024282915000213
Astrid Cornils, Leocadio Blanco-Bercial, 2013, 'Phylogeny of the Paracalanidae Giesbrecht, 1888 (Crustacea: Copepoda: Calanoida)', Molecular Phylogenetics and Evolution, vol. 69, no. 3, pp. 861-872 https://doi.org/10.1016/j.ympev.2013.06.018
Baeza, J. 2013. Baeza, J.A. 2013. Multi-locus molecular phylogeny of broken-back shrimps (genus Lysmata and allies): a test of the 'Tomlinson-Ghiselin' hypothesis explaining the evolution of simultaneous hermaphroditism. Molecular Evolution and Phylogenetics 69 (1): 46-62. https://doi.org/10.1016/j.ympev.2013.05.013
Baldwin B.G., Kalisz S., & Armbruster W.S. 2011. Phylogenetic perspectives on diversification, biogeography, and floral evolution of Collinsia and Tonella (Plantaginaceae). American Journal of Botany, 98(4): 731-753. https://doi.org/10.3732/ajb.1000346
Ban S., Sakane T., Toyama K., & Nakagiri A. 2009. Teleomorph-anamorph relationships and reclassification of Cordyceps cuboidea and its allied species. Mycoscience, 50: 261-272. https://doi.org/10.1007/s10267-008-0480-y
Banks, J., & Paterson A. 2004. A penguin-chewing louse (Insecta: Phthiraptera) phylogeny derived from morphology. Invertebrate Systematics 18 (1): 89-100. https://doi.org/10.1071/IS03022
Barker, F. Keith, Alice Cibois, Peter Schikler, Julie Feinstein, Joel Cracraft. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the United States of America 101 (30): 11040-11045. https://doi.org/10.1073/pnas.0401892101
Barker, F. Keith, Kevin J. Burns, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2015. New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies. The Auk 132 (2): 333-348. https://doi.org/10.1642/auk-14-110.1
Barnes I., Roux J., Wingfield B., Dudzinski M., Old K., & Wingfield M.J. 2003. Ceratocystis pirilliformis, a new species from Eucalyptus nitens in Australia. Mycologia 95, no. 5 (2003): 865-871. https://doi.org/10.2307/3762015
Barns, S. M., C. F. Delwiche, J. D. Palmer, N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proceedings of the National Academy of Sciences 93 (17): 9188-9193. https://doi.org/10.1073/pnas.93.17.9188
Bartosova P., Fiala I., & Hypsa V. 2009. Concatenated SSU and LSU rDNA data confirm the main evolutionary trends within myxosporeans (Myxozoa: Myxosporea) and provide an effective tool for their molecular phylogenetics. Molecular Phylogenetics and Evolution, 53(1): 81-93. https://doi.org/10.1016/j.ympev.2009.05.018
Bayha K.M., & Dawson M.N. 2010. A new family of allomorphic jellyfishes, Drymonematidae (Scyphozoa, Discomedusae), emphasizes evolution in the functional morphology and trophic ecology of gelatinous zooplankton. Biological Bulletin, 219(3).
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Benayahu Y, Ofwegen LP van, Soong K, Dai C-F, Jeng M-S, Shlagman A, Hsieh HJ, McFadden CS (2013) Diversity and distribution of Octocorals (Coelenterata: Anthozoa) on the coral reefs of Penghu, Taiwan. Zoological Studies 51: 1529-1548. http://zoolstud.sinica.edu.tw/Journals/51.8/1529
Bendiksby, M., Thorbek, L., Scheen, A. C., Lindqvist, C., & Ryding, O. (2011). An updated phylogeny and classification of Lamiaceae subfamily Lamioideae. Taxon, 60(2), 471-484. http://www.ingentaconnect.com/content/iapt/tax/2011/00000060/00000002/art00015
Benjamin Ollomo, Patrick Durand, Franck Prugnolle, Emmanuel Douzery, Celine Arnathau, Dieudonne Nkoghe, Eric Leroy, Francois Renaud, 2009, 'A New Malaria Agent in African Hominids', PLoS Pathogens, vol. 5, no. 5, p. e1000446 https://doi.org/10.1371/journal.ppat.1000446
Benny K. K. Chan, Hsiu-Chin Lin, Yi-Yang Chen, 2013, 'Biodiversity and host specificity of coral barnacles of Galkinia (Cirripedia: Pyrgomatidae) in Taiwan, with descriptions of six new species', Journal of Crustacean Biology, vol. 33, no. 3, pp. 392-431 https://doi.org/10.1163/1937240x-00002134
Benny K.K. CHAN, Chi Chiu CHEANG, I-Han CHEN, Gregory A. KOLBASOV, 2013, '<p><strong>Acrothoracican barnacles (Lithoglyptida) in Taiwan, including the taxonomic status of <em>Balanodytes</em> <em>taiwanus</em> Utinomi, 1950 and cryptic diversity of <em>Auritoglyptes bicornis</em> (Aurivillius, 1892)</strong></p>', Zootaxa, vol. 3694, no. 3, p. 221 https://doi.org/10.11646/zootaxa.3694.3.3
Bentlage B. 2010. Evolution of box jellyfish (Cnidaria: Cubozoa), a group of highly toxic invertebrates. Proceedings of the Royal Society B: Biological Sciences, 277(1680): 493-501. https://doi.org/10.1098/rspb.2009.1707
Benz, Brett W., Mark B. Robbins, A. Townsend Peterson. 2006. Evolutionary history of woodpeckers and allies (Aves: Picidae): placing key taxa on the phylogenetic tree. Molecular Phylogenetics and Evolution 40 (2): 389-399. https://doi.org/10.1016/j.ympev.2006.02.021
Benz, Brett W., Mark B. Robbins. 2011. Molecular phylogenetics, vocalizations, and species limits in Celeus woodpeckers (Aves: Picidae). Molecular Phylogenetics and Evolution 61 (1): 29-44. https://doi.org/10.1016/j.ympev.2011.05.001
Bertelli, Sara, Ana Luz Porzecanski. 2004. Tinamou (Tinamidae) systematics: a preliminary combined analysis of morphology and molecules. 2004. Ornithologia Neotropical 15: 293-299 https://sora.unm.edu/sites/default/files/journals/on/v015s/p0293-p0300.pdf
Besnard, Guillaume, Joris A. M. Bertrand, Boris Delahaie, Yann X. C. Bourgeois, Emeline Lhuillier, Christophe Thébaud. 2015. Valuing museum specimens: high-throughput DNA sequencing on historical collections of New Guinea crowned pigeons (Goura). Biological Journal of the Linnean Society 117 (1): 71-82 https://doi.org/10.1111/bij.12494
Betancur-R., Ricardo, Richard E. Broughton, Edward O. Wiley, Kent Carpenter, J. Andrés López, Chenhong Li, Nancy I. Holcroft, Dahiana Arcila, Millicent Sanciangco, James C Cureton II, Feifei Zhang, Thaddaeus Buser, Matthew A. Campbell, Jesus A Ballesteros, Adela Roa-Varon, Stuart Willis, W. Calvin Borden, Thaine Rowley, Paulette C. Reneau, Daniel J. Hough, Guoqing Lu, Terry Grande, Gloria Arratia, Guillermo Ortí. 2013. The Tree of Life and a New Classification of Bony Fishes. PLoS Currents https://doi.org/10.1371/currents.tol.53ba26640df0ccaee75bb165c8c26288
Bhushan Shrestha, Min Woo Hyun, Junsang Oh, Jae-Gu Han, Tae Ho Lee, Jae Youl Cho, Hyojeung Kang, Seong Hwan Kim, Gi-Ho Sung, 2014, 'Molecular evidence of a teleomorph-anamorph connection between Cordyceps scarabaeicola and Beauveria sungii and its implication for the systematics of Cordyceps sensu stricto', Mycoscience, vol. 55, no. 3, pp. 231-239 https://doi.org/10.1016/j.myc.2013.09.004
Bills G., Polishook J., Goetz M., Sullivan R., & White J. 2002. Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels. Mycological Progress, 1(1): 3-17. https://doi.org/10.1007/s11557-006-0001-3
Bischoff J., Sullivan R., Kjer K., & Jr J. 2004. Phylogenetic placement of the anamorphic tribe Ustilaginoideae (Hypocreales, Ascomycota). Mycologia, 96: 1088-1094. https://doi.org/10.2307/3762091
Bischoff, Joseph F., Priscila Chaverri, and James F. White. "Clarification of the host substrate of Ascopolyporus and description of Ascopolyporus philodendrus sp. nov." Mycologia 97.3 (2005): 710-717. https://doi.org/10.3852/mycologia.97.3.710
Bischoff, Joseph F., Stephen A. Rehner, and Richard A. Humber. "A multilocus phylogeny of the Metarhizium anisopliae lineage." Mycologia 101.4 (2009): 512-530. https://doi.org/10.3852/07-202
Blanchard, Benjamin D., Corrie S. Moreau. 2016. Defensive traits exhibit an evolutionary trade-off and drive diversification in ants. Evolution https://doi.org/10.1111/evo.13117
Blanco, Oscar, Ana Crespo, Pradeep K. Divakar, John A. Elix, and H. Thorsten Lumbsch. "Molecular phylogeny of parmotremoid lichens (Ascomycota, Parmeliaceae)." Mycologia 97, no. 1 (2005): 150-159. https://doi.org/10.3852/mycologia.97.1.150
Blaxter, Mark L., Paul De Ley, James R. Garey, Leo X. Liu, Patsy Scheldeman, Andy Vierstraete, Jacques R. Vanfleteren, Laura Y. Mackey, Mark Dorris, Linda M. Frisse, J. T. Vida, W. Kelley Thomas. 1998. A molecular evolutionary framework for the phylum Nematoda. Nature 392 (6671): 71-75. https://doi.org/10.1038/32160
Boatwright J., Roux M., Wink M., Morozova T., & Wyk B. 2008. Phylogenetic Relationships of the Tribe Crotalarieae (Fabaceae) Inferred from DNA Sequences and Morphology. Systematic botany, 33(4), 752-761. https://doi.org/10.1600/036364408786500271
Boatwright J., Savolainen V., Wyk B., Schutte-vlok A., Forest F., & Bank M. 2007. Systematic position of the anomolous genus Cadia and the phylogeny of the tribe Podalyrieae (Fabaceae). Systematic Botany, 33(1), 133-147. https://doi.org/10.1600/036364408783887500
Bock, Christina, Wei Luo, Wolf-Henning Kusber, Eberhard Hegewald, Marie Pažoutová, Lothar Krienitz. 2013. Classification of crucigenoid algae: phylogenetic position of the reinstated genus Lemmermannia, Tetrastrum spp. Crucigenia tetrapedia, and C. lauterbornii (Trebouxiophyceae, Chlorophyta). Journal of Phycology 49 (2): 329-339 https://doi.org/10.1111/jpy.12039
Bonaccorso, Elisa, Juan M. Guayasamin, A. Townsend Peterson, Adolfo G. Navarro-Sigüenza. 2011. Molecular phylogeny and systematics of Neotropical toucanets in the genus Aulacorhynchus (Aves, Ramphastidae). Zoologica Scripta 40 (4): 336-349. https://doi.org/10.1111/j.1463-6409.2011.00475.x
Bonnie R. Lei, Kevin J. Olival, 2014, 'Contrasting Patterns in Mammal–Bacteria Coevolution: Bartonella and Leptospira in Bats and Rodents', PLoS Neglected Tropical Diseases, vol. 8, no. 3, p. e2738 https://doi.org/10.1371/journal.pntd.0002738
Bracken, H. D., De Grave, S., Toon, A., Felder, D. L., & Crandall, K. A. 2010. Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda). Zoologica Scripta 39 (2): 198-212. https://doi.org/10.1111/j.1463-6409.2009.00410.x
Bracken-Grissom, Heather D., Maren E. Cannon, Patricia Cabezas, Rodney M. Feldmann, Carrie E. Schweitzer, Shane T. Ahyong, Darryl L. Felder, Rafael Lemaitre, and Keith A. Crandall. 2013. A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda). BMC Evolutionary Biology 13 (1): 128. https://doi.org/10.1186/1471-2148-13-128
Bracken-Grissom, Heather D., Shane T. Ahyong, Richard D. Wilkinson, Rodney M. Feldmann, Carrie E. Schweitzer, Jesse W. Breinholt, Matthew Bendall, Ferran Palero, Tin-Yam Chan, Darryl L. Felder, Rafael Robles, Ka-Hou Chu, Ling-Ming Tsang, Dohyup Kim, Joel W. Martin, and Keith A. Crandall. 2014. The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology: syu008v1-syu008. https://doi.org/10.1093/sysbio/syu008
Bracken‐Grissom, H. D., Felder, D. L., Vollmer, N. L., Martin, J. W., & Crandall, K. A. (2012). Phylogenetics links monster larva to deep‐sea shrimp. Ecology and Evolution 2 (10): 2367-2373. https://doi.org/10.1002/ece3.347
Brady, S., Schultz T., Fisher B., & Ward P. 2006. Evaluating alternative hypotheses for the early evolution and diversification of ants. Proceedings of the National Academy of Sciences of the United States of America, 103 (48): 18172-18177. https://doi.org/10.1073/pnas.0605858103
Breinholt, JW, Porter ML, Crandall KA (2012) Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae). PLoS ONE 7 (9): e46105 https://doi.org/10.1371/journal.pone.0046105
Bremer, B., & Eriksson, O. 2009. Time tree of Rubiaceae: Phylogeny and dating the family, subfamilies and tribes. Internat. J. Plant Sci. 170: 766-793. https://doi.org/10.1086/599077
Brumfield, R., & Edwards S. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in Thamnophilus antshrikes. Evolution 61 (2): 346-367. https://doi.org/10.1111/j.1558-5646.2007.00039.x
Burlakoti R.R., Neate S.M., Adhikari T., Gyawali S., Salas B., Steffenson B.J., & Schwarz P.B. 2011. Trichothecene Profiling and Population Genetic Analysis of Gibberella zeae from Barley in North Dakota and Minnesota. Phytopathology, 101(6): 687-695. https://doi.org/10.1094/PHYTO-04-10-0101
Burlakoti, R. R., S. Ali, G. A. Secor, S. M. Neate, M. P. McMullen, and T. B. Adhikari. "Genetic relationships among populations of Gibberella zeae from barley, wheat, potato, and sugar beet in the Upper Midwest of the United States." Phytopathology 98, no. 9 (2008): 969-976. https://doi.org/10.1094/PHYTO-98-9-0969
Burns, J. H., Faden, R. B., & Steppan, S. J. 2011. Phylogenetic studies in the Commelinaceae subfamily Commelinoideae inferred from nuclear ribosomal and chloroplast DNA sequences. Syst. Bot. 36: 268-276. https://doi.org/10.1600/036364411X569471
Burns, Kevin J., Allison J. Shultz, Pascal O. Title, Nicholas A. Mason, F. Keith Barker, John Klicka, Scott M. Lanyon, Irby J. Lovette. 2014. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds. Molecular Phylogenetics and Evolution 75: 41-77. https://doi.org/10.1016/j.ympev.2014.02.006
Bärmann, E.V., Rössner G.E., & Wörheide G. 2013. A revised phylogeny of Antilopini (Bovidae, Artiodactyla) using combined mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 67 (2): 484-493. https://doi.org/10.1016/j.ympev.2013.02.015
Cabezas, P., Sanmartin I., Paulay G., Macpherson E., & Machordom A. 2011. Deep under the sea: unraveling the evolutionary history of the deep-sea squat lobster Paramunida (Decapoda, Munididae). Evolution 66 (6): 1878-1896. https://doi.org/10.1111/j.1558-5646.2011.01560.x
Cabrera L., Salazar G., Chase M., Mayo S., Bogner J., & Davila P. 2008. Phylogenetic relationships of aroids and duckweeds (Araceae) inferred from coding and non-coding plastid DNA. American Journal of Botany, 95: 1153-1165. https://doi.org/10.3732/ajb.0800073
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